pkg(octave-6.2.0): add octave 6.2.0 (#247)

This reverts commit a49acc7dbe.

api/Dockerfile

@@ -10,7 +10,10 @@ RUN for i in $(seq 1001 1500); do \
 RUN apt-get update && \
     apt-get install -y libxml2 gnupg tar coreutils util-linux libc6-dev \
     binutils build-essential locales libpcre3-dev libevent-dev libgmp3-dev \
-    libncurses6 libncurses5 libedit-dev libseccomp-dev rename procps python3 && \
+    libncurses6 libncurses5 libedit-dev libseccomp-dev rename procps python3 \
+    libreadline-dev libblas-dev liblapack-dev libpcre3-dev libarpack2-dev \
+    libfftw3-dev libglpk-dev libqhull-dev libqrupdate-dev libsuitesparse-dev \
+    libsundials-dev && \
     rm -rf /var/lib/apt/lists/*
 
 RUN sed -i '/en_US.UTF-8/s/^# //g' /etc/locale.gen && locale-gen

api/src/api/v2.js

@@ -1,14 +1,13 @@
 const express = require('express');
 const router  = express.Router();
 
-const config = require('../config');
 const runtime = require('../runtime');
 const {Job} = require("../job");
 const package = require('../package')
 const logger = require('logplease').create('api/v1');
 
 router.post('/execute', async function(req, res){
-        const {language, version, files, stdin, args, run_timeout, compile_timeout, max_memory_usage} = req.body;
+        const {language, version, files, stdin, args, run_timeout, compile_timeout} = req.body;
 
         if(!language || typeof language !== "string")
         {
@@ -38,7 +37,7 @@ router.post('/execute', async function(req, res){
         }
 
         for (const [i,file] of files.entries()) {
-            if(!file.content || typeof file.content !== "string"){
+            if(typeof file.content !== "string"){
                 return res
                     .status(400)
                     .send({
@@ -47,21 +46,6 @@ router.post('/execute', async function(req, res){
             }
         }
 
-        if (max_memory_usage) {
-            if (typeof max_memory_usage !== "number" || max_memory_usage < 0) {
-                return res
-                    .status(400)
-                    .send({
-                        message: "if specified, max_memory_usage must be a non-negative number"
-                    })
-            } else if (max_memory_usage > config.max_memory_usage) {
-                return res
-                    .status(400)
-                    .send({
-                        message: "max_memory_usage cannot exceed the configured limit of " + config.max_memory_usage
-                    })
-            }
-        }
 
 
     
@@ -84,8 +68,7 @@ router.post('/execute', async function(req, res){
             timeouts: {
                 run: run_timeout || 3000,
                 compile: compile_timeout || 10000
-            },
+            }
-            max_memory_usage: max_memory_usage || config.max_memory_usage
         });
 
         await job.prime();

api/src/config.js

@@ -108,12 +108,6 @@ const options = [
         default: 1000000, //1MB
         validators: []
     },
-    {
-        key: 'max_memory_usage',
-        desc: 'Max memory usage in bytes',
-        default: 256000000, //256MB
-        validators: []
-    },
     {
         key: 'repo_url',
         desc: 'URL of repo index',

api/src/job.js

@@ -19,7 +19,7 @@ let gid = 0;
 
 class Job {
 
-    constructor({ runtime, files, args, stdin, timeouts, max_memory_usage }) {
+    constructor({ runtime, files, args, stdin, timeouts }) {
         this.uuid =  uuidv4();
         this.runtime = runtime;
         this.files = files.map((file,i) => ({
@@ -30,7 +30,6 @@ class Job {
         this.args = args;
         this.stdin = stdin;
         this.timeouts = timeouts;
-        this.max_memory_usage = max_memory_usage;
 
         this.uid = config.runner_uid_min + uid;
         this.gid = config.runner_gid_min + gid;
@@ -76,8 +75,7 @@ class Job {
                 'prlimit',
                 '--nproc=' + config.max_process_count,
                 '--nofile=' + config.max_open_files,
-                '--fsize=' + config.max_file_size,
+                '--fsize=' + config.max_file_size
-                '--as=' + this.max_memory_usage
             ];
 
             const proc_call = [
@@ -163,8 +161,7 @@ class Job {
             compile = await this.safe_call(
                 path.join(this.runtime.pkgdir, 'compile'),
                 this.files.map(x => x.name),
-                this.timeouts.compile,
+                this.timeouts.compile
-                config.max_memory_usage
             );
         }
 
@@ -173,8 +170,7 @@ class Job {
         const run = await this.safe_call(
             path.join(this.runtime.pkgdir, 'run'),
             [this.files[0].name, ...this.args],
-            this.timeouts.run,
+            this.timeouts.run
-            this.max_memory_usage
         );
 
         this.state = job_states.EXECUTED;

packages/octave/6.2.0/build.sh

@@ -0,0 +1,22 @@
+#!/usr/bin/env bash
+
+# Build octave from source
+PREFIX=$(realpath $(dirname $0))
+
+mkdir -p build
+
+cd build
+
+curl -L "https://ftpmirror.gnu.org/octave/octave-6.2.0.tar.gz" -o octave.tar.gz
+
+tar xzf octave.tar.gz --strip-components=1
+
+# === autoconf based ===
+# Disable support for GUI, HDF5 and Java
+./configure --prefix "$PREFIX" --without-opengl --without-qt --without-x --without-hdf5 --disable-java
+
+make -j$(nproc)
+make install -j$(nproc)
+
+cd ../
+rm -rf build

packages/octave/6.2.0/environment

@@ -0,0 +1,4 @@
+#!/usr/bin/env bash
+
+# Path to octave binary
+export PATH=$PWD/bin:$PATH

packages/octave/6.2.0/metadata.json

@@ -0,0 +1,5 @@
+{
+  "language": "octave",
+  "version": "6.2.0",
+  "aliases": []
+}

packages/octave/6.2.0/run

@@ -0,0 +1,4 @@
+#!/usr/bin/env bash
+
+# Run octave scripts without gui, history, init scripts and initial message
+octave --no-gui --no-window-system --no-history --no-init-file --no-site-file --norc --quiet "$@"

packages/octave/6.2.0/test.octave

@@ -0,0 +1 @@
+disp('OK')

readme.md

@@ -210,7 +210,6 @@ This endpoint requests execution of some arbitrary code.
 - `args` (*optional*) The arguments to pass to the program. Must be an array or left out. Defaults to `[]`.
 - `compile_timeout` (*optional*) The maximum time allowed for the compile stage to finish before bailing out in milliseconds. Must be a number or left out. Defaults to `10000` (10 seconds).
 - `run_timeout` (*optional*) The maximum time allowed for the run stage to finish before bailing out in milliseconds. Must be a number or left out. Defaults to `3000` (3 seconds).
-- `max_memory_usage` (*optional*) The maximum amount of memory the run stage is allowed to use. Must be a number or left out. Defaults to `256000000` (256 MB)
 
 ```json
 {
@@ -229,8 +228,7 @@ This endpoint requests execution of some arbitrary code.
         "3"
     ],
     "compile_timeout": 10000,
-    "run_timeout": 3000,
+    "run_timeout": 3000
-    "max_memory_usage": 256000000
 }
 ```
 A typical response upon successful execution will contain 1 or 2 keys `run` and `compile`.

repo/Dockerfile

@@ -6,8 +6,9 @@ RUN apt-get update && apt-get install -y unzip autoconf build-essential libssl-d
         linux-headers-amd64 perl xz-utils python3 python3-pip gnupg jq zlib1g-dev \
         cmake cmake-doc extra-cmake-modules build-essential gcc binutils bash coreutils \
         util-linux pciutils usbutils coreutils binutils findutils grep libncurses5-dev \
-        libncursesw5-dev python3-pip libgmp-dev libmpfr-dev python2 libffi-dev \
+        libncursesw5-dev python3-pip libgmp-dev libmpfr-dev python2 libffi-dev gfortran\
-        libreadline-dev && \
+        libreadline-dev libblas-dev liblapack-dev libpcre3-dev libarpack2-dev libfftw3-dev \
+        libglpk-dev libqhull-dev libqrupdate-dev libsuitesparse-dev libsundials-dev && \
         ln -sf /bin/bash /bin/sh && \
         rm -rf /var/lib/apt/lists/* && \
         update-alternatives --install /usr/bin/python python /usr/bin/python3.7 2
@@ -16,3 +17,4 @@ ADD entrypoint.sh mkindex.sh /
 
 ENTRYPOINT ["bash","/entrypoint.sh"]
 CMD ["--no-build"]
+