From 1250cf213adce6bb5d26615506d9823463c0a371 Mon Sep 17 00:00:00 2001
From: Brikaa <brikaaomar@gmail.com>
Date: Sun, 12 Sep 2021 14:38:57 +0200
Subject: [PATCH] pkg(rscript-4.1.1): Added R 4.1.1

---
 api/Dockerfile                       |  2 +-
 packages/rscript/4.1.1/build.sh      | 16 ++++++++++++++++
 packages/rscript/4.1.1/environment   |  1 +
 packages/rscript/4.1.1/metadata.json |  5 +++++
 packages/rscript/4.1.1/run           |  2 ++
 packages/rscript/4.1.1/test.r        |  1 +
 repo/Dockerfile                      |  4 ++--
 7 files changed, 28 insertions(+), 3 deletions(-)
 create mode 100755 packages/rscript/4.1.1/build.sh
 create mode 100644 packages/rscript/4.1.1/environment
 create mode 100644 packages/rscript/4.1.1/metadata.json
 create mode 100644 packages/rscript/4.1.1/run
 create mode 100644 packages/rscript/4.1.1/test.r

diff --git a/api/Dockerfile b/api/Dockerfile
index 668c54a..ec0d2a8 100644
--- a/api/Dockerfile
+++ b/api/Dockerfile
@@ -13,7 +13,7 @@ RUN apt-get update && \
     libncurses6 libncurses5 libedit-dev libseccomp-dev rename procps python3 \
     libreadline-dev libblas-dev liblapack-dev libpcre3-dev libarpack2-dev \
     libfftw3-dev libglpk-dev libqhull-dev libqrupdate-dev libsuitesparse-dev \
-    libsundials-dev && \
+    libsundials-dev libpcre2-dev && \
     rm -rf /var/lib/apt/lists/*
 
 RUN sed -i '/en_US.UTF-8/s/^# //g' /etc/locale.gen && locale-gen
diff --git a/packages/rscript/4.1.1/build.sh b/packages/rscript/4.1.1/build.sh
new file mode 100755
index 0000000..9837c22
--- /dev/null
+++ b/packages/rscript/4.1.1/build.sh
@@ -0,0 +1,16 @@
+#!/bin/bash
+
+PREFIX=$(realpath $(dirname $0))
+
+mkdir build
+cd build
+
+curl https://cloud.r-project.org/src/base/R-4/R-4.1.1.tar.gz -o R.tar.gz
+tar xzf R.tar.gz --strip-components 1
+
+./configure --prefix="$PREFIX" --with-x=no
+make -j$(nproc)
+make install -j$(nproc)
+
+cd ../
+rm -rf build
diff --git a/packages/rscript/4.1.1/environment b/packages/rscript/4.1.1/environment
new file mode 100644
index 0000000..977a5e8
--- /dev/null
+++ b/packages/rscript/4.1.1/environment
@@ -0,0 +1 @@
+export PATH=$PWD/bin:$PATH
diff --git a/packages/rscript/4.1.1/metadata.json b/packages/rscript/4.1.1/metadata.json
new file mode 100644
index 0000000..db16a76
--- /dev/null
+++ b/packages/rscript/4.1.1/metadata.json
@@ -0,0 +1,5 @@
+{
+    "language": "rscript",
+    "version": "4.1.1",
+    "aliases": ["r"]
+}
diff --git a/packages/rscript/4.1.1/run b/packages/rscript/4.1.1/run
new file mode 100644
index 0000000..d122eb8
--- /dev/null
+++ b/packages/rscript/4.1.1/run
@@ -0,0 +1,2 @@
+#/bin/bash
+Rscript "$@"
diff --git a/packages/rscript/4.1.1/test.r b/packages/rscript/4.1.1/test.r
new file mode 100644
index 0000000..9273f27
--- /dev/null
+++ b/packages/rscript/4.1.1/test.r
@@ -0,0 +1 @@
+cat('OK')
diff --git a/repo/Dockerfile b/repo/Dockerfile
index 106fef4..56ca59d 100644
--- a/repo/Dockerfile
+++ b/repo/Dockerfile
@@ -8,7 +8,8 @@ RUN apt-get update && apt-get install -y unzip autoconf build-essential libssl-d
         util-linux pciutils usbutils coreutils binutils findutils grep libncurses5-dev \
         libncursesw5-dev python3-pip libgmp-dev libmpfr-dev python2 libffi-dev gfortran\
         libreadline-dev libblas-dev liblapack-dev libpcre3-dev libarpack2-dev libfftw3-dev \
-        libglpk-dev libqhull-dev libqrupdate-dev libsuitesparse-dev libsundials-dev && \
+        libglpk-dev libqhull-dev libqrupdate-dev libsuitesparse-dev libsundials-dev \
+        libbz2-dev liblzma-dev libpcre2-dev && \
         ln -sf /bin/bash /bin/sh && \
         rm -rf /var/lib/apt/lists/* && \
         update-alternatives --install /usr/bin/python python /usr/bin/python3.7 2
@@ -17,4 +18,3 @@ ADD entrypoint.sh mkindex.sh /
 
 ENTRYPOINT ["bash","/entrypoint.sh"]
 CMD ["--no-build"]
-